Bioinformatics Research Group

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[ Upcoming events ] [ Past events ] [ Bioinformatics day ] You can add these events to a vCalendar compatible calendar application using the following link: http://www.bioinformatics.uwaterloo.ca/events/icalendar.php Upcoming events Past events Mon, Nov 2, 2009 11:00 DC1304 Computational Tools to Study Protein Low-Frequency Motions by Jean-Claude Latombe, Computer Science Department, Stanford University [ More details ]     Wed, Nov 26, 2008 2:00pm DC1331 Discovering Variation from Short Read Data by Michael Brudno, University of Toronto [ More details ]     Thu, Nov 20, 2008 3:30pm DC1304 A Probabilistic Model of Gene Structure Evolution by Brona Brejova , Cornell University [ More details ]     Tue, Aug 12, 2008 2:00pm DC2305a PhD. seminar CAPE: Concurrent Alignment and Parameter Estimation by Alexander K. Hudek, University of Waterloo [ More details ]     Fri, Jul 25, 2008 2:00pm DC2305a EVOLUTION OF GENES: CHANGES OVER TIME AND IN LINEAGES by Tomas Vinar, Cornell [ More details ]     Fri, Jul 25, 2008 3:00pm DC2305 Generating Pseudo Residues from NMR Peak Lists by Frank Balbach (and Emre Karakoc), Waterloo [ More details ]     Fri, Jul 18, 2008 2pm DC1304 On Approximating Four Covering and Packing Problems with applications to Bioinformatics by Bhaskar DasGupta, University of Illinois, Chicago [ More details ]     Fri, Jul 11, 2008 2:00pm DC1302 Gene Team Tree: Visualizing all Gene Teams by Hon Wai Leong, National University of Singapore [ More details ]     Mon, Mar 10, 2008 2:30 pm DC1304 New Methods for Modeling the Dynamics of Biomolecular Structures by Christopher Langmead, Carnegie Mellon University [ More details ]     Thu, Mar 6, 2008 9:00 am DC2305a Computing Protein Interaction Modules Using Graph Algorithms by Chris Ding, University of Texas at Arlington [ More details ]     Mon, Dec 3, 2007 2:00pm DC2305 The Barcode of Life Initiative by Mehrdad Hajibabaei, University of Guelph [ More details ]     Mon, Sep 17, 2007 2:00pm DC2305a Applied gene finding in human and Schistosoma japonicum by Brona Brejova, Cornell [ More details ]     Mon, Aug 27, 2007 1:00pm DC1331 A Graph Clustering Approach to Weak Motif Recognition by Christina Boucher, University of Waterloo [ More details ]     Thu, Jul 12, 2007 11:00 DC1204 (Near) linear time algorithms for computing edit distances approximately by Cenk Sahinalp, CRC Chair in Bioinformatics, Dept of Computer Science, Simon Fraser Univ [ More details ]     Fri, Jun 29, 2007 10:00 DC130 University of Waterloo Mini-Symposium on Bioinformatics by multiple speakers 10am to 4pm [ More details ]     Tue, May 29, 2007 11:00 DC2305 Indel Seeds for Homology Search in DNA by Denise Mak, Boston University [ More details ]     Fri, May 25, 2007 11:00 DC1304 New approaches to protein structure prediction by Yang Zhang, University of Kansas [ More details ]     Thu, Apr 19, 2007 2:00pm DC2305 Computing exact p-values for DNA motifs by Jing Zhang, Tsinghua University [ More details ]     Mon, Mar 12, 2007 2:00pm DC2305 Studying natural selection in human genome using comparative genomics and newly sequenced rhesus macaque by Tomas Vinar, Cornell University [ More details ]     Tue, Nov 21, 2006 2:30 DC1331 Jumping Hidden Markov models for recombination detection in HIV by Anne-Kathrin Schultz, Department of Bioinformatics, University of Goettingen, Germany [ More details ]     Mon, Oct 23, 2006 1pm DC 1331 Master Thesis presentation Homologous Gene Finding with a Hidden Markov Model by Xuefeng Cui [ More details ]     Fri, Oct 6, 2006 2:40pm DC2305 Tree decomposition for Protein Structure Problems by Feng Jiao [ More details ]     Fri, Sep 15, 2006 10:00 DC1304 Semidefinite Embedding for the Dimensionality Reduction of DNA Microarray Data by Rosina Kharal, University of Waterloo [ More details ]     Tue, Aug 22, 2006 1:00 DC3313 Bioinformatics Group Master’s Essay Presentation Support vector regression-based QSAR by Jeonggyu Yoon [ More details ]     Mon, Aug 14, 2006 11:00 DC2305 Bioinformatics seminar Rapid Protein Side-Chain Packing via Tree Decomposition by Jinbo Xu, Toyota Technological Institute at Chicago [ More details ]     Wed, Aug 9, 2006 11:00 DC2305 Bioinformatics lab meeting S. japonica Genome Project by Yan Zhou, Chinese Human Genome Center in Shanghai [ More details ]     Mon, Jul 10, 2006 10:00 DC1331 Bioinformatics Seminar Information Discovery for Genome Data by Phoebe Chen, Deakin University Melbourne [ More details ]     Wed, Jul 5, 2006 11:00 DC1304 Bioinformatics Seminar A Parameterized Algorithm for Protein Structure Alignment by Jinbo Xu, Toyota Technological Institute at Chicago [ More details ]     Wed, Jun 28, 2006 11:00 DC2305 Bioinformatics Group Lab Meeting A Tale of Two Topics --- Motif Significance and Sensitivity of Spaced Seeds by Ming Li [ More details ]     Wed, Jun 21, 2006 11:00 DC2305 Bioinformatics Group Lab Meeting Deriving a stochastic model to identify peptide through mass spectrum by Dongbo Bu [ More details ]     Wed, Jun 14, 2006 9:50 meet at DC2582 Bioinformatics Group Lab Meeting Visiting labs in biology #1 [ More details ]     Wed, May 31, 2006 3:30 MC 5158 Combinatorics and Optimization Seminar Bioinformatics, Combinatorics and Optimization: Interdisciplinary Research in Math and Computer Science by Ian Harrower Second half of a two-part seminar [ More details ]     Wed, May 31, 2006 11:00 DC2305 Bioinformatics Group Lab Meeting CASP: Critical Assessment of Techniques for Protein Structure Prediction by Dongbo Bu, Xin Gao, Shuai C. Li [ More details ]     Wed, May 17, 2006 11:00 DC2305 Bioinformatics Group Lab Meeting Using Graph Clustering to Find Weak Motifs by Christina Boucher [ More details ]     Wed, May 3, 2006 2:00 DC2305 Bioinformatics Group Lab Meeting Homologous Gene Finding by Xuefeng Cui [ More details ]     Wed, Apr 26, 2006 2:00 DC2305 !change Bioinformatics Group Lab Meeting Haplotype inference and its relationship with phylogenetic networks by Ian Harrower [ More details ]     Mon, Apr 10, 2006 10:30 DC1304 Computer Science Seminar High-throughput NMR Protein Backbone Resonance Sequential Assignment by Guohui Lin, University of Alberta Grad. students, meet with the speaker 4:00pm in DC2314 [ More details ]     Thu, Apr 6, 2006 11:30 DC1304 Graduate Student Research Conference Using Kernel Alignment to Pick Molecule Descriptors in a QSAR Study by William Wong [ More details ]     Thu, Apr 6, 2006 3:40 DC1304 Graduate Student Research Conference Bayesian LAGO for Statistical Detection With Applications to Drug Discovery by Wanhua Su, Department of Statistics and Actuarial Science [ More details ]     Wed, Apr 5, 2006 3:20 DC1304 Graduate Student Research Conference Structure of the Genetic Code Indicates Non-Thermophile Origin of Life by Alexander Gutfraind, Department of Applied Mathematics [ More details ]     Mon, Apr 3, 2006 10:30 MC 5158 Computer Science Seminar Discovering Patterns in Families of Protein Structures by Jun (Luke) Huan, UNC, Chapel Hill, NC Grad. students, meet with the speaker 4:00pm in DC2314 [ More details ]     Mon, Mar 27, 2006 10:30 DC1304 Computer Science Seminar Remote Homology Detection with String Kernels and Network Diffusion by Rui Kuang, Department of Computer Science, Columbia University Grad. students, meet with the speaker 4:00pm in DC2314 [ More details ]     Mon, Mar 20, 2006 10:30 DC 1304 Computer Science Seminar Imputation of DNA microarray data by Dr. Ming Ouyang, Department of Pharmacology, U. of Medicine & Dentistry of New Jersey Grad. students, meet with the speaker 4:00pm in DC2314 [ More details ]     Mon, Mar 13, 2006 10:30 DC1304 Computer Science Seminar Estimating the significance of sequence motifs by Uri Keich, Cornell University Grad. students, meet with the speaker 4:00pm in DC2314 [ More details ]     Wed, Mar 1, 2006 11:00 DC2305 Bioinformatics Group Lab Meeting Approaches to Transmembrane Helix Packing by Richard Jang [ More details ]     Tue, Feb 21, 2006 3:30 MC5136 Applied Mathematics Seminar Control Theoretic Approaches in Systems Biology by Brian Ingalls, Dept. of Applied Mathematics, University of Waterloo [ More details ]     Wed, Feb 8, 2006 2:00 DC2305 Bioinformatics Lab Meeting Anchoring multiple sequence alignment by Alex Hudek [ More details ]     Wed, Dec 14, 2005 6:30-8:30 Grad house Bioinformatics Research Group's annual winter party [ More details ]     Thu, Nov 24, 2005 11:30 DC 1331 From estimating significance of sequence motifs to the goodness-of-fit test: an approach to analyzing exact tests by Uri Keich, Cornell University Department of Computer Science [ More details ]     Thu, Nov 17, 2005 4:30 DC 2305 Bioinformatics Lab Meetings Bioinformatics group computing resources and usage by Alex Hudek [ More details ]     Mon, Nov 14, 2005 2:30 MC 5158 Computational Mathematics Colloquium Systems biology of cellular regulation and signaling: multiscale and multidisciplinary approaches to network structure and function by Dr. Chris Myers, Cornell Theory Center, Cornell University [ More details ]     Fri, Oct 21, 2005 3:00 MC 5136 Computational Mathematics Seminar HOPE: A Homotopy Optimization Method for Protein Structure Prediction by Dianne P. O'Leary, University of Maryland [ More details ]     Fri, Oct 21, 2005 11:15 DC1304 PhD Oral Defence Evidence Combination in Hidden Markov Models for Gene Prediction by Bronislava Brejova [ More details ]     Fri, Oct 14, 2005 10:00 DC1304 ICR Seminar Gene finding using HMMs and comparative sequence analysis by Burkhard Morgenstern, Institute of Microbiology and Genetics, University of Goettingen [ More details ]     Wed, Oct 12, 2005 4:00 DC1304 PhD Oral Defence Enhancements to Hidden Markov Models for Gene Finding and Other Biological Applications by Tomas Vinar [ More details ]     Tue, Sep 27, 2005 1:00 B1-266 Presentation on the DogBox server by Anthony and John Moniakis, Unleashed Informatics [ More details ]     Tue, Sep 27, 2005 4:30 DC2305 Bioinformatics Lab Meetings Welcoming New Students and ISMB Summary Meeting [ More details ]     Tue, Sep 20, 2005 3:30 C2-361 Institute of Biochemistry and Molecular Biology Seminar BIND and Blueprint's new resources for Small Molecule Interactions. by Chris Hogue, University of Toronto, Samuel Lunenfeld Research Institute [ More details ]     Thu, Sep 15, 2005 3:00 PHY150 Physics Colloquium In Silico Folding of Small Proteins by Ulrich H.E. Hansmann, Michigan Technological University, Neumann Institute for Computing [ More details ]     Wed, Sep 14, 2005 3:00 DC2306C Artificial Intelligence Seminar Beyond pairwise classification and clustering using hypergraphs by Jiayuan Huang, University of Waterloo / University of Alberta [ More details ]     Tue, Sep 13, 2005 9:30 DC1331 Master's Thesis Presentation Protein Secondary Structure Prediction using inter-residue contacts by Gabriel Renaud [ More details ]     Mon, Sep 12, 2005 3:00 DC2306C Aritificial Intelligence Seminar Learning from labeled and unlabeled data on a directed graph by Jiayuan Huang, University of Waterloo / University of Alberta [ More details ]     Fri, Sep 9, 2005 4:00 WLU-BA101 Laurier Seminar Series in Computational Science and Applied & Statistical Modeling Computational Biology of Gene regulation in Bacillus subtilis by Michiel de Hoon, Columbia University, New York The talk is at Wilfired Laurier University [ More details ]     Thu, Aug 18, 2005 2:00 DC 1331 Masters's Thesis Presentation FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach by Shirley Hui, graduate student, School of Computer Science [ More details ]     Mon, Aug 15, 2005 3:30 MC5158 Computational Mathematics Colloquia A New Markov Approach to Finding Correlated, Modular Patterns in Random Sequences with Applications to RNA Structure by Rob Knight, Computational Biology, University of Colorado at Boulder [ More details ]     Thu, Aug 4, 2005 11:00 DC1304 Bioinformatics Seminar Gene regulation in Prokarya: Lessons learned from the model organism by Sarath Chandra Janga, Program of Computational Genomics, Center for Genomics Sciences, Mexico [ More details ]     Wed, Jul 6, 2005 2:00 DC2305 Towards a better thermodynamic model for RNA secondary structure formation by Mirela Andronescu, University of British Columbia [ More details ]     Tue, Jul 5, 2005 3:30 DC 1304 Master's Essay Presentation Protein Flexibility Modeling Using Growing Spheres and the Obnoxious Facility Location Problem by M. Usman Shakeel [ More details ]     Thu, Jun 30, 2005 11:00 DC1304 Bioinformatics Seminar Protein NMR Spectral Data Analysis by Guohui Lin, University of Alberta [ More details ]     Fri, Jun 10, 2005 11:30 DC2306C Artificial Intelligence Seminar Evidence combination in gene finding by Brona Brejova [ More details ]     Thu, Jun 9, 2005 4:00 WLU/BA101 Laurier Seminar in CSASM Expression and Regulation of Protein Complexes in Yeast: Towards a Dynamic View by Shoshana Wodak, Center for Computational Biology and Genomic Computing, HSC More information: http://www.mmcs.wlu.ca/csasm/ [ More details ]     Thu, Jun 9, 2005 11:00 DC1304 Bioinformatics Seminar Super patterns and their applications in bioinformatics and finance by Ming Li We will go to lunch afterwards; please, join us [ More details ]     Thu, Jun 2, 2005 10:30 DC2305 Bioinformatics Lab Meeting RECOMB summary meeting by Dan Brown, Gabriel Renaud, Andrew Doxey, Tomas Vinar We will go to lunch afterwards; please, join us [ More details ]     Wed, Jun 1, 2005 3:30 DC1304 Algorithms & Complexity Seminar Toward an understanding of haplotype inference by pure parsimony by Ian Harrower [ More details ]     Thu, May 12, 2005 11:00 DC2305 Bioinformatics Lab meeting Improving RNA energy model by Mirela Andronescu We will go to a lunch afterwards. Please, join us. [ More details ]     Wed, May 11, 2005 2:00 DC1331 Master Thesis Presentation RNA Homology Searches Using Pair Seeding by Sriram Darbha [ More details ]     Mon, Apr 25, 2005 2:30 MC5136 PhD Thesis Defence Statistical Methods for High Throughput Screening Drug Discovery Data by Yuanyuan (Marcia) Wang, Department of Statistics [ More details ]     Thu, Apr 21, 2005 10:30 DC1304 Computer Science Seminar Bioinformatics with Learning Machines by Haifeng Li, University of California, Riverside [ More details ]     Mon, Apr 18, 2005 3:30 MC5158 Computational Mathematics Seminar Simulating Protein Folding Pathway and the Need of Distributed Computation by Jeff Z.Y. Chen, Department of Physics, University of Waterloo [ More details ]     Tue, Apr 12, 2005 5:00 grad house The Interdisciplinary Coffee Talk Society Stem cells: Where do they come from and what do they do? by Jennifer Quinn, University of Toronto [ More details ]     Mon, Apr 11, 2005 2:00 DC1304 Cyclic Combinational Circuits and Other Novel Constructs by Marc D. Riedel, California Institute of Technology [ More details ]     Fri, Apr 8, 2005 11:30 DC2306C Artificial Intelligence Seminar Using Lexical Chaining to Rank Protein-Protein Interactions in Biomedical Text by Chrysanne DiMarco [ More details ]     Thu, Mar 24, 2005 1:00 DC 2306C Bioinformatics Seminar Protein Classification and Meta-Organization by Golan Yona, Cornell University CANCELLED [ More details ]     Mon, Mar 7, 2005 10:30 DC 1304 Computer Science Seminar Hidden Markov models and mutant fruitflies -- A case study in Computational Biology by Saurabh Sinha, University of Washington Graduate students can meet with the speaker at 3:00pm in DC2305 [ More details ]     Mon, Feb 28, 2005 10:30 DC1304 Computer Science Seminar Alignment of Whole Genomes: Algorithms and Tools by Michael Brudno, UC Berkeley Meeting with graduate students at 3:00 in DC2305 [ More details ]     Thu, Feb 17, 2005 4:00 WLU BA101 Laurier Seminar Series in Computational Science and Applied and Statistical Modelling Some results in Mathematical Biology and in Ramsey Theory by Daniel Kleitman, Massechusets Institute of Technology Talk is at Wilfried Laurier University [ More details ]     Mon, Feb 14, 2005 3:30 DC2305 Bioinformatics Problem Session Protein Interactions by Co-Evolutionary Interdependencies [ More details ]     Thu, Jan 20, 2005 5:00 Grad House Bioinformatics Welcome Year 2005 Party [ More details ]     Tue, Jan 18, 2005 9:15 MC 5158 Master's Thesis Presentation An Application of Integer Linear Programming to the Haplotype Inference by Pure Parsimony Problem by Ian Harrower [ More details ]     Fri, Jan 14, 2005 2:30 B2-350 Department of Biology Guest Seminar Series Using Comparative Genomics to Find Core Fungal Genes by Dr. Tom Hsiang, Department of Environmental Biology, University of Guelph [ More details ]     Wed, Jan 12, 2005 3:30 DC1304 Waterloo Institute for Health Informatics Research DNA-inspired Physics Theory and Biological Relevance by Bae-Yeun Ha, Department of Physics, University of Waterloo [ More details ]     Fri, Dec 10, 2004 1:45 DC 1304 Bioinformatics seminar Operon Recombination: the D'Artagnan of Functional Inference from Genomic Context by Gabriel Moreno-Hagelsieb, Department of Biology, Wilfrid Laurier University [ More details ]     Wed, Dec 8, 2004 3:30 DC 1304 WIHIR Health Informatics Research Seminar Bioinformatics in the health sciences: towards tailored medicine? by Brendan McConkey, Assistant Professor, Biology, University of Waterloo [ More details ]     Fri, Dec 3, 2004 1:30 DC1304 Oral PhD Defence Probability Models for Information Processing and Machine Perception by Christopher J. Pal, Ph.D. Candidate, SCS, University of Waterloo [ More details ]     Thu, Nov 25, 2004 11:30 DC1302 Molecular Ecologist Candidate Seminar Molecular ecology of Atlantic Salmon: Dissecting Fitness Components by Dany Garant, Edward Grey Institute, Oxford, U.K. [ More details ]     Thu, Nov 18, 2004 11:30 MC5136 Molecular Ecologist Candidate Seminar Probing the pace of evolution: Accelerated Molecular Divergence, Frozen Phenotypes and Spectacular Morphological Diversification by Jonathan Witt, University of British Columbia [ More details ]     Mon, Nov 15, 2004 11:30 MC5158 Molecular Ecologist Candidate Seminar Cooperation and Conflict Over Reproduction in Bird Societies: a Molecular Ecological Approach by Susan McCrae, East Carolina University [ More details ]     Tue, Nov 9, 2004 2:00 DC1331 Master's Thesis Presentation Consensus Fold Recognition by Predicted Model Quality by Libo Yu [ More details ]     Mon, Nov 8, 2004 3:30 DC2305 Bioinformatics Problem Session Generating pharmacophore space for molecular signatures [ More details ]     Tue, Oct 19, 2004 3:00 DC2305 Bioinformatics lab meeting WABI summary [ More details ]     Fri, Oct 8, 2004 1:00 DC2305A There's a monkey in the pool! by Miklos Csuros, University of Montreal [ More details ]     Thu, Sep 23, 2004 2:00 DC1316 Master's Thesis Presentation New Anchoring Techniques for Multiple Sequence Alignment by Alexander K. Hudek [ More details ]     Wed, Sep 15, 2004 2:30 DC1304 Bioinformatics Seminar Tandem Repeat Evolution in the Human Genome: An Algorithmic Study by S. Cenk Sahinalp, Simon Fraser University Title and abstract change! [ More details ]     Fri, Sep 10, 2004 1:00 DC1331 Master's Thesis Presentation Discovering Protein Sequence-Structure Motifs and Two Applications to Structural Prediction by Thomas C. K. Tang [ More details ]     Thu, Sep 2, 2004 2:00 DC1302 Bioinformatics Seminar Comparing and Classifying Protein Structures by Ambuj Singh, University of California at Santa Barbara [ More details ]     Wed, Aug 18, 2004 3:30 DC2305A An Application of Integer Linear Programming in Haplotype Analysis by Ian Harrower [ More details ]     Wed, Aug 11, 2004 3:30 DC1304 Bioinformatics Seminar Making physical interaction out of statistics of protein structures by Yaoqi Zhou, Laboratory of Biophysics and Bioinformatics, University of Buffalo [ More details ]     Fri, Jul 16, 2004 2:00 MC5158 Systems Biology: From Gene Expression to Biological Rhythms by Steve Almond, Geoff Hunter, University of Waterloo [ More details ]     Mon, Jun 28, 2004 11:00 MC5158 Applied Mathematics Seminar Design and Diversity in Bacterial Chemotaxis by Christopher Rao, Lawrence Berkeley National Laboratory [ More details ]     Mon, May 3, 2004 3:30 DC1302 Master's Thesis Presentation Adapting Information Retrieval Techniques for a Biomedical Corpus by David Yeung [ More details ]     Fri, Apr 30, 2004 10:00 DC2305 Bioinformatics Problem Session Reusing results of previous computations in phylogenetic analysis [ More details ]     Thu, Apr 29, 2004 2:30 DC2305 Bioinformatics Seminar TIGR in the ''commodity genome'' era by Jonathan Badger, TIGR (The Institute for Genomic Research) Jonathan will be available after the talk for questions and discussion [ More details ]     Thu, Apr 29, 2004 10:30 DC1302 Bioinformatics Seminar Applications of Phylogenomics for Genomic Analysis by Jonathan Badger, TIGR (The Institute for Genomic Research) [ More details ]     Thu, Apr 29, 2004 11:30 MC5158 WIHIR Health Informatics Research Seminar Health, Biotechnology and Cellnet: Bioprocesses for Drugs, Food and the Environment by Murray Moo-Young, Chemical Engineering [ More details ]     Wed, Apr 21, 2004 2:45 DC1304 Bioinformatics Seminar Algorithms for RNA secondary structure prediction and design by Mirela Andronescu, University of British Columbia Meet with Mirela after the talk in DC2305 [ More details ]     Fri, Apr 2, 2004 9:30 DC1302 Graduate Student Research Conference Interdisciplinary Communication: Learning a New Language by Panel Discusion [ More details ]     Thu, Apr 1, 2004 9:20 DC1302 Graduate Student Research Conference Application of Correspondence Analysis as a Visual Tool in the Discovery of Disease Associated Genes by Rosina Kharal [ More details ]     Thu, Apr 1, 2004 10:20 DC1302 Graduate Student Research Conference An Investigative Approach Into Dimensionality Reduction Techniques for Protein Flexibility Modeling by Shirley Hui, M. Usman Shakeel [ More details ]     Mon, Mar 29, 2004 10:30 MC5158 Computer Science Seminar Applications of sequence motifs in protein sequence analysis by Asa Ben-Hur, Stanford University and Technion - Israel Institute of Technology Graduate student interview at 4:30 in DC2305 [ More details ]     Mon, Mar 22, 2004 10:30 DC1304 Computer Science Seminar Sequence Assembly and Protein Docking Algorithms by Vicky Choi, Duke University Change! Meeting with grad students at 4:30pm (DC2305) [ More details ]     Mon, Mar 22, 2004 2:30 DC2305 Bioinformatics Problem Session Lower bounds for PTAS for motif finding Change! different time [ More details ]     Mon, Mar 15, 2004 10:00 DC1331 Master's Thesis Presentation Automation of Glycopeptide Discovery in MS/MS Data by Sajani Swamy [ More details ]     Tue, Mar 9, 2004 3:30 C2 -361 Institute of Biochemistry and Molecular Biology - Seminar Series The methionine salvage pathway as a target for the structure-based design of novel antibiotics by Dr. P. Lynne Howell, Hospital for Sick Children, Structural Biology & Biochemistry, University of Toronto [ More details ]     Mon, Mar 8, 2004 4:00 MC2034 UW Bioinformatics Club You should know more about your alignments before you try to find them! by Tomas Vinar [ More details ]     Tue, Feb 24, 2004 4:00 MC1085 UW Bioinformatics Club Bioengineering Needs Bioinformatics: It's the only Way by Eric Jervis, Dept. of Chemical Engineering, UW [ More details ]     Fri, Feb 20, 2004 1:00 DC2305 Master's Thesis Presentation A Combinatorial Approach for Motif Discovery in Unaligned DNA Sequences by Jiang Liu [ More details ]     Mon, Feb 16, 2004 11:30 DC1304 Databases Seminar Distance Based Indexing and Similarity Search for Sequences by Z. Meral Ozsoyoglu, Case Western Reserve University Meral will be meeting grad students 3:00-4:00pm in DC3301 [ More details ]     Mon, Feb 9, 2004 3:15 DC2305 Bioinformatics Problem Session Finding specific strings [ More details ]     Mon, Feb 9, 2004 2:00 DC1316 Master's Thesis Presentation The Use of Internal and External Functional Domains to Improve Transmembrane Protein Topology Prediction by Emily Xu [ More details ]     Tue, Jan 27, 2004 3:30 MC5136 Conjugate Dirichlet Process Mixture Models: Gene Expression, Efficient Sampling, and Clustering by David Dahl, University of Wisconsic - Madison [ More details ]     Tue, Jan 27, 2004 4:30 RCH309 UW Club for Undergraduate Bioengineers Biotechnology in New Zealand by Janis Swan, University of Waikato [ More details ]     Mon, Jan 26, 2004 3:00 DC1304 Bioinformatics Seminar Efficient Protein Identification Techniques by Mark Cieliebak, ETH Zurich [ More details ]     Mon, Jan 19, 2004 3:30 DC1304 Master's Essay Presentation The use of vector seeds to improve PSI-BLAST sensitivity by Fengkai Zhang [ More details ]     Wed, Dec 10, 2003 4:30 DC2305 Bioinformatics & friends Christmas party [ More details ]     Thu, Nov 20, 2003 2:30 DC2305 Bioinformatics Problem Session Sequencing by compomers [ More details ]     Tue, Oct 28, 2003 3:30 C2-361 Institute of Biochemistry and Molecular Biology - Seminar Series Design of multiplexed SNP genotyping assays by dan brown [ More details ]     Fri, Oct 24, 2003 2:30 MC 5158 Applied Mathematics Colloquium Biological Applications of Chemical Reaction Network Theory by Dr. Martin Feinberg, Chemical Engineering & Mathematics, Ohio State University Talk cancelled!! [ More details ]     Mon, Oct 20, 2003 11:00 DC1304 Databases seminar Efficient Exploration of Links and Paths in Life Sciences Data Sources by Louiqa Raschid, University of Maryland [ More details ]     Thu, Oct 16, 2003 2:30 DC2305 Bioinformatics Problem Sessions Drawing Ancestral Recombination Graph [ More details ]     Thu, Oct 9, 2003 2:30 DC2305 Bioinformatics Lab Meetings WABI 2003 summary by various speakers [ More details ]     Tue, Oct 7, 2003 3:30 C2 361 Institute of Biochemistry and Molecular Biology - Seminar Series Recent Insights into Plant and Fungal Biology using Gene Expression Datasets and Genome Resources by Dr. Nick Provart, University of Toronto, Department of Botany [ More details ]     Mon, Sep 29, 2003 10:00 DC1331 Bioinformatics Seminar Comparative ab initio prediction of gene structures by Irmtraud Meyer, Department of Statistics, Oxford University [ More details ]     Thu, Sep 11, 2003 4:00 PHYS150 Physics Colloquium RNA structure and molecular phylogenetics by Prof. Paul Higgs, McMaster University [ More details ]     Fri, Aug 29, 2003 1:00 DC1304 PhD thesis oral defence Protein Structure Prediction Using Linear Programming by Jinbo Xu [ More details ]     Wed, Aug 27, 2003 3:30 DC1304 Algorithms and Complexity Seminar Design Optimal Multiple Seeds for Homology Search by Jinbo Xu [ More details ]     Wed, Aug 6, 2003 1:30 DC2305 Finding Regulatory Patterns in DNA, A Combinatorial Approach by Ian Harrower [ More details ]     Wed, Aug 6, 2003 2:00 DC2305 Bioinformatics lab meeting CPM 2003 summary meeting by Brona Brejova, Dan Brown, Tomas Vinar [ More details ]     Fri, Aug 1, 2003 2:30 DC2306C Artificial Intelligence Seminar Denoising and untangling graphs with applications to bioinformatics by Quaid Morris, University of Toronto [ More details ]     Wed, Jul 23, 2003 4:30 DC2305 Bioinformatics lab meeting RECOMB 2003 summary meeting + movie by Alex Hudek [ More details ]     Wed, Jun 18, 2003 4:30 DC2305 Bioinformatics lab meeting Genome Informatics Meeting / Movie by Brona Brejova [ More details ]     Thu, Jun 5, 2003 5:00 grad house Interdisciplinary Coffee Talk Society Seminar Chain Letters & Evolutionary Histories by Ming Li [ More details ]     Wed, May 28, 2003 3:30 DC1304 Algorithms and Complexity Seminar Linking Chain Letters by Ming Li, CRC Chair in Bioinformatics, Professor, School of Computer Science, University of Waterloo [ More details ]     Thu, Apr 24, 2003 5:00 grad house Interdisciplinary Coffee Talk Society Seminar How to decode DNA: Protein structure prediction by Jinbo Xu [ More details ]     Wed, Apr 16, 2003 3:30 MC5158 Applied Math Seminar Genetic Circuit Design by Stephen Davies, Institute for Biomaterials and Biomedical Engineering of the University of Toronto Rescheduled from April 4 [ More details ]     Thu, Apr 10, 2003 2:30 MC6091A Statistics & Actuarial Science Seminar On Statistical Methods in Gene Mapping by Dr. Catherine Xin Gao, University of Ottawa [ More details ]     Fri, Mar 28, 2003 10:30 DC1331 Evolutionary History of Languages and Answer Set Programming by Esra Erdem, Department of Computer Science University of Toronto [ More details ]     Wed, Mar 26, 2003 2:30 MC5158 Optimization Seminar An optimization problem no one noticed: Optimal spaced seeds for homologous coding DNA search by Daniel G. Brown [ More details ]     Thu, Mar 20, 2003 10:30 DC1302 Computer Science Seminar PEAKS: MS/MS de novo sequencing and protein identification by Bin Ma, University of Western Ontario Graduate student meeting with the speaker; time an place TBA [ More details ]     Mon, Mar 17, 2003 3:30 DC2305 Bioinformatics Problem Session Anchors and pairwise DNA sequence alignment II. [ More details ]     Thu, Mar 6, 2003 3:30 MC5158 Statistics and Actuarial Science Seminar Statistical Methods for Detection of Pedigree Errors in Genetic Linkage Studies by Dr. Lei Sun, University of Toronto [ More details ]     Thu, Mar 6, 2003 10:30 DC1302 Computer Science Seminar Using Information Retrieval for Large Scale Gene Analysis by Hagit Shatkay, Informatics Research Group, Celera Genomics Meeting with grad students 4:30-5:30 in DC2305 [ More details ]     Fri, Feb 28, 2003 1:00 DC1304 System Biology: Control Theoretic Analysis of Biochemical Networks by Prof. Brian Ingalls, Department of Applied Math [ More details ]     Thu, Feb 13, 2003 11:30 DWE-2517 From DNA microarray to gene marker finding and regulatory networking by He Yang, Dept. of Chemical Engineering, Northwestern University Coffee and Donuts served at 11:20 [ More details ]     Wed, Feb 12, 2003 3:30 DC1304 Bioinformatics Seminar Protein Threading by Integer Programming: Part 2, Theoretical Analysis and Practical Results by Jinbo Xu [ More details ]     Thu, Feb 6, 2003 3:30 DC1304 Bioinformatics Seminar TrAPPS: Automated Knowledge Discovery for High-Throughput Disease Gene Mutation Screening by Prof. Thomas L. Casavant, Director of Bioinformatics and Computational Biology Center, University of Iowa [ More details ]     Fri, Jan 31, 2003 1:00 MC5158 Bioinformatics seminar The assembly of the human genome from the computer scientist's viewpoint by Laurent Mouchard, University of Rouen, France [ More details ]     Mon, Jan 20, 2003 3:30 DC2305 Bioinformatics Problem Sessions Founder haplotype identification [ More details ]     Wed, Dec 18, 2002 1:00 DC2305 CS 798 course project presentations by Shirley Hui, Wenfeng Yang, Rosina Kharal, William Wong [ More details ]     Mon, Dec 9, 2002 3:30 DC2305 Bioinformatics Problem Session Can phylogeography help to build better phylogenies? [ More details ]     Mon, Nov 18, 2002 3:30 DC2305 Bioinformatics Problem Session Signal transduction pathway graphs [ More details ]     Fri, Nov 8, 2002 2:30 DC1302 Algorithms and Complexity Seminar Construction of signal transduction pathway using high-throughput data and bioinformatics predictions by Dong Xu, Protein Informatics Group, Life Sciences Division, Oak Ridge National Laboratory [ More details ]     Wed, Oct 30, 2002 3:30 DC1304 Algorithms and Complexity Seminar Protein Threading by Integer Programming by Jinbo Xu [ More details ]     Wed, Oct 16, 2002 3:30 DC1304 Algorithms and Complexity Seminar Optimal Spaced Seeds for Finding Homologous Coding Regions by Brona Brejova [ More details ]     Mon, Oct 7, 2002 3:30 DC2305 Bioinformatics Problem Sessions Prediction of contact maps [ More details ]     Fri, Oct 4, 2002 3:30 DC1302 School of Computer Science Research Group Presetations Bioinformatics; Algorithms and Complexity [ More details ]     Fri, Oct 4, 2002 2:30 N1044 (WLU) Support for high-performance bioinformatics applications by Jack da Silva, North Caroline Supercomputing Center [ More details ]     Tue, Sep 24, 2002 2:30 DC2305 ISMB 2002 summary meeting II. by Brona Brejova, Dan Brown, Forbes Burkowski, Derek Phillips, Tomas Vinar [ More details ]     Mon, Sep 23, 2002 3:30 DC2305 Bioinformatics Problem Session Anchors and pairwise DNA sequence alignment [ More details ]     Tue, Sep 17, 2002 2:30 DC2305 Bioinformatics lab meeting ISMB 2002 summary by Brona Brejova, Dan Brown, Forbes Burkowski, Derek Phillips, Tomas Vinar [ More details ]     Wed, Jul 24, 2002 3:30 DC1304 Master's Thesis Presentation Efficient Uniform Sampling From Phylogenetic Trees by Derek Phillips [ More details ]     Mon, Jul 15, 2002 3:30 DC2305 Bioinformatics Problem Session Eulerian superpath problem [ More details ]     Mon, Jun 3, 2002 3:30 DC2305 Bioinformatics Problem Session Ordering leaves II. [ More details ]     Fri, May 24, 2002 10:00 DC1304 Bioinformatics Seminar Effective discrimination of native protein structures using an atom-atom contact potential by Brendan McConkey, Weizmann Institute of Science, Israel Graduate student meeting with Brendan at 2:30 in DC2102! [ More details ]     Thu, May 16, 2002 1:00 DC2305 RECOMB 2002 summary meeting by Tomas Vinar, Chris Pal [ More details ]     Wed, Apr 17, 2002 4:00 @WLU When Combinatorics and Phylogenetics Collide by David Bryant, McGill University. Talk at WLU, Alwin Wood Building 3-203. [ More details ]     Tue, Apr 16, 2002 1:30 DC2305 Bioinformatics Problem Sessions Drawing the Trees [ More details ]     Tue, Apr 16, 2002 10:30 DC1302 Bioinformatics Seminar From consensus trees to supertrees by David Bryant, McGill University [ More details ]     Thu, Mar 28, 2002 3:30 MC5158 Statistics & Actuarial Science Seminar Runs and Patterns with Biomedical Applications by W.Y. Wendy Lou, University of Toronto [ More details ]     Thu, Mar 7, 2002 10:30-11:30 DC1304 Computer Science Seminar Computational Understanding of Gene Regulation: From Gene Expression to Gene Networks by Vladimir Filkov, State University of New York at Stony Brook [ More details ]     Thu, Mar 7, 2002 3:30 DC3540 Graduate student meeting with Vladimir Filkov [ More details ]     Tue, Mar 5, 2002 1:00 DC2305 Bioinformatics Problem Session Linkage Disequilibrium and Reconstruction of Ancestral Chromosomes [ More details ]     Thu, Feb 28, 2002 12:30 C2-170 Biology Bioinformatics Candidates Computational Theoretical Evolutionary Biology by Jonathan Stone [ More details ]     Wed, Feb 27, 2002 11:30 B2-350 Biology Bioinformatics Candidates An Effective Method for the Discrimination of Correctly Folded Protein Structures by Brendan McConkey [ More details ]     Mon, Feb 25, 2002 12:30 B1-370 Biology Bioinformatics Candidates Cell Cycle Checkpoint Models and Pathway Databases by Baltazar Aguda [ More details ]     Wed, Feb 13, 2002 3:45 DC1304 Algorithms and Complexity Seminar A Better Method For Length Distribution Modeling in HMMs and Its Application to Gene Finding by Tomas Vinar [ More details ]     Tue, Feb 12, 2002 1:30 DC2305 Bioinformatics Problem Session Automatic Sequence Finishing [ More details ]     Mon, Feb 11, 2002 4:00 DC3540 Graduate student meeting with Mathieu Blanchette [ More details ]     Mon, Feb 11, 2002 10:30 DC1302 Computer Science Seminar Algorithms for Phylogenetic Footprinting by Mathieu Blanchette, University of Washington [ More details ]     Thu, Feb 7, 2002 8:00pm Theatre of the Arts Pascal Lectures (Public Lectures) Biotechnology and Policy Making by Bartha Knoppers, Universite de Montreal [ More details ]     Thu, Feb 7, 2002 12:30 B1-370 Pascal Lectures (Seminar) The Human Genome, Human Dignity and Benefit Sharing by Bartha Knoppers, Universite de Montreal [ More details ]     Wed, Feb 6, 2002 8:00pm Theatre of the Arts Pascal Lectures (Public Lectures) The Perils of Genetic Predestination by Bartha Knoppers, Universite de Montreal [ More details ]     Mon, Jan 21, 2002 3:30 DC2305 Bioinformatics Problem Sessions Physical Mapping of DNA Using Probe Interval Graphs [ More details ]     Fri, Dec 14, 2001 3:30 DC2305 Bioinformatics Holiday Party and Farewell to Mike [ More details ]     Fri, Dec 14, 2001 1:30 DC1304 Master's Thesis Presentation A Quartet Based Collapsing Method for Efficient Recovery of Optimal Edges in Phylogenetic Trees by Michael Hu [ More details ]     Mon, Dec 3, 2001 3:30 DC2305 Bioinformatics Problems Sessions Multiplex SNP Genotyping (revisited) [ More details ]     Thu, Nov 22, 2001 2:00 MC5136 Algebraic Combinatorics Seminar (C&O) Phylogenetic trees -- motivation,metrics, matchings, and mysteries by Prof. David Wagner, Dept. of Combinatorics & Optimization, University of Waterloo [ More details ]     Mon, Nov 5, 2001 3:30 DC2305 Bioinformatics Problem Sessions Pattern-oriented technique for identifying regulatory elements [ More details ]     Mon, Oct 22, 2001 3:30 DC2305 Bioinformatics Problem Session Multiplex SNP genotyping [ More details ]     Wed, Oct 17, 2001 3:30 DC1304 Algorithms and Complexity Seminar A Game on Interval Graphs or Finding Genes Using PCR by Brona Brejova [ More details ]     Tue, Aug 7, 2001 3:30 DC1316 ISMB summary meeting [ More details ]     Wed, Jul 25, 2001 2:00 DC1331 Master's Thesis Presentation COPIA: A New Software for Finding Consensus Patterns in Unaligned Protein Sequences by Chengzhi Liang [ More details ]     Mon, Jul 9, 2001 3:30 DC1316 Bioinformatics Problem Sessions Parameter Estimation Using Data from Related Species [ More details ]     Tue, Jun 26, 2001 10:45 DC1304 Faculty of Mathematics Graduate Student Conference Finding genes in DNA sequences by Brona Brejova [ More details ]     Tue, Jun 26, 2001 11:30 DC1304 Faculty of Mathematics Graduate Student Conference Bioinformatics problem sessions: selected topics by Tomas Vinar [ More details ]     Wed, Jun 20, 2001 10:30 MC6091A PhD. thesis defence Design and Analysis of Large Chemical Databases for Drug Discovery by Lap-Hing Raymond Lam, Dept. of Statistics and Actuarial Science [ More details ]     Mon, Jun 11, 2001 3:30 DC1316 Bioinformatics Problem Session Optimal Tree Refinement [ More details ]     Mon, Jun 11, 2001 8:30 AL116 51st Annual Meeting of the Canadian Society of Microbiologists Bioinformatics in the Post Genomic Era [ More details ]     Fri, May 18, 2001 9:00-4:30 MC5158 Two-Day Research Workshop on Classification and Large Data Sets (CLDS) Invited talks (Tree Models in Marketing, Data Mining, Mining of Text Data, Drug Discovery) Registration deadline: April 15, 2001 [ More details ]     Thu, May 17, 2001 9:00-4:00 MC5158 Two-Day Research Workshop on Classification and Large Data Sets (CLDS) Classification Workshop by David Hand, Imperial College, London, England Registration deadline: April 15, 2001 [ More details ]     Wed, May 16, 2001 10:30 DC1331 Master Thesis Presentation Modeling Protein Secondary Structure By Products of Dependent Experts by Christian Cumbaa [ More details ]     Tue, May 15, 2001 10:00 DC3313 RECOMB Summary Meeting II [ More details ]     Mon, May 14, 2001 3:30 DC1316 Bioinformatics problem session Analyzing Tandem Mass Spectrometry Data [ More details ]     Tue, May 8, 2001 4:45 DC1331 RECOMB Summary Meeting [ More details ]     Mon, Apr 2, 2001 3:30 DC1316 Bioinformatics Problem Session Average parsimony cost [ More details ]     Mon, Feb 19, 2001 3:30 DC1316 Bioinformatics Problem Session Variants of Global Sequence Alignment [ More details ]     Fri, Feb 16, 2001 10:30 DC 1302 Database Seminar Sequential and Parallel FastLSA: A Linear-Space Algorithm for Pairwise Sequence Alignment by Paul Lu, University of Alberta [ More details ]     Thu, Feb 8, 2001 3:00 DC1304 Bioinformatics Seminar Informatics for Large-Scale, Full-Length cDNA Sequencing and Gene Discovery by Thomas L. Casavant, The Coordinated Lab for Computational Genomics, University of Iowa [ More details ]     Thu, Feb 1, 2001 4:30 DC1331 Artificial Intelligence Seminar Probabilistic Modeling and Biological Sequence Analysis by Chris Pal [ More details ]     Mon, Jan 22, 2001 3:30 DC1316 Bioinformatics Problem Session ExonPCR and alternative splicing [ More details ]     Fri, Dec 15, 2000 7:30 fishbowl Party for Jonathan [ More details ]     Thu, Dec 14, 2000 3:30 DC1316 Bioinformatics Problem Session Regular expression similarity [ More details ]     Thu, Nov 16, 2000 3:30 DC1316 Bioinformatics Problem Session MEDLINE database query result analysis [ More details ]     Thu, Oct 12, 2000 3:30 DC1331 Bioinformatics Problem Session Visualization of Hierarchical Clustering of Gene Expression Data [ More details ]     Mon, Aug 14, 2000 9:00 DC 1304 Master's Thesis Presentation Reconstruction of Tandem Repeat Histories with a PTAS by Navdeep Jaitly [ More details ]     Fri, Jun 30, 2000 3:30 DC1304 Master Thesis Presentation Inferring and Comparing Evolutionary Trees by John Tsang [ More details ]     Tue, Jun 27, 2000 3:30 DC1302 University of Waterloo Faculty of Mathematics Graduate Student Conference Multi-state Markov Models for Analyzing Disease History Data with Multi-variate Outcomes and Missing Observations by Shenghai Zhang, graduate student, Department of Statistics [ More details ]     Mon, Jun 26, 2000 2:20 DC1304 University of Waterloo Faculty of Mathematics Graduate Student Conference HyperCleaning*: An Effective Algorithm for Reconstructing Large Phylogenies by Mike Hu [ More details ]     Mon, Jun 26, 2000 2:45 DC1304 University of Waterloo Faculty of Mathematics Graduate Student Conference Probabilistic Modeling of Protein Structure by Christian Cumbaa [ More details ]     Wed, May 24, 2000 3:30 DC1304 Algorithms and Complexity Seminar A Polynomial-Time Approximation Scheme for the Closest Substring Problem by Bin Ma, Computer Science, University of Waterloo [ More details ]     Thu, Apr 13, 2000 10:30 DC1302 Computer science seminar On the complexity of fundamental computational problems in pedigree analysis by Antonio Piccolboni, University of California-Berkeley [ More details ]     Mon, Apr 3, 2000 TBA TBA Reading session Transformational Grammars [ More details ]     Thu, Mar 30, 2000 10:30 DC1304 Computer science seminar Two design changes for genetic mapping projects: theoretical justification and experimental results by Daniel Brown, Dept. Computer Science, Cornell University [ More details ]     Mon, Mar 27, 2000 3:30 ICR board Hierarchical Sequence Similarity by Patricia Evans, Computer Science, University of New Brunswick [ More details ]     Fri, Mar 24, 2000 2:00 DC3540 Reading session Gibbs sampling, Monte Carlo methods [ More details ]     Fri, Mar 10, 2000 2:00 DC3594 Reading session Profile HMMs [ More details ]     Thu, Mar 9, 2000 4:00 MC4062 Research meeting Go out for dinner afterwards [ More details ]     Mon, Mar 6, 2000 12:30 B1-370 Biology bioinformatics candidates Models of Experimental Evolution by Linda Wahl [ More details ]     Fri, Mar 3, 2000 2:00 DC3540 Reading session Probabilistic Sequence Alignment [ More details ]     Fri, Feb 25, 2000 2:00 DC2102 Reading session Hidden Markov Models [ More details ]     Mon, Feb 21, 2000 12:30 TBA Biology bioinformatics candidates TBA by Jonathan Stone Group interview from 4:10 - 4:30 in DC3540 [ More details ]     Fri, Feb 18, 2000 2:00 DC3594 Reading session Chapter 3 of 'Biological Sequence Analysis' by Durbin, Eddy, et. al. [ More details ]     Thu, Feb 17, 2000 10:30 DC1304 Computer Science Seminar Peptide Sequencing and Identification via Tandem Mass Spectrometry by Tim Chen, Dept of Genetics, Harvard Medical School Graduate interview DC2102 3:30-4:30 [ More details ]     Tue, Feb 15, 2000 12:30 DC1304 Biology bioinformatics candidates Mouse Genome Informatics: A path to function by Christina Haston, Department of Genetics and Genomic Biology, Hospital for Sick Children, Toronto Interview 4:10-4:30 in DC3540 [ More details ]     Mon, Feb 14, 2000 12:30 B1-370 Biology bioinformatics candidates Databases, Introns and Evolution by Nicholas Schisler Interview 4:10-4:30 in DC3540 [ More details ]     Tue, Feb 8, 2000 12:30 B1-370 Biology bioinformatics candidates A bioinformatics and genomics approach to molecular evolution by Elisabeth Tillier, Faculty of Medicine at UofT [ More details ]     Mon, Feb 7, 2000 10:30 DC1304 Informal talk by Kevin Lanctot [ More details ]     Fri, Feb 4, 2000 3:30 DC1304 Institute for Computer Research presents Finding Short Patterns in Strings, with Applications to the Ribosome Binding Site Problem by Dr. Martin Tompa, University of Washington Invited by Prof. Ming Li [ More details ]     Bioinformatics Day University of Waterloo Bioinformatics Day (November 1998) [Invitation] [Schedule] [Abstracts]

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